PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496217.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Trihelix
Protein Properties Length: 465aa    MW: 52685.1 Da    PI: 10.1778
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496217.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.93e-14155257276
        trihelix   2 WtkqevlaLiearr.emeerlrrgk............................lkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 
                     Wt qe+l Li+a++ + +er  ++                             + + +W++v +++++ g+ rs++qC++kw+nl ++ykk+++ 
  XP_004496217.2 155 WTIQETLILITAKKlD-DERRLKNTstpsssqdpnrtttnvtsiasasssnrnSGELRWKWVENYCWSNGCLRSQNQCNDKWDNLLRDYKKVRDY 248
                     *************953.44433322245556666777777777778888887799**************************************** PP

        trihelix  68 ekkrtsess 76 
                     e+k +s++ 
  XP_004496217.2 249 ESKSESPNN 257
                     **9865554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.202147239IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.3E-5151166IPR009057Homeodomain-like
PfamPF138372.6E-9154254No hitNo description
Gene3DG3DSA:1.10.10.609.3E-5204240IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MSLCFTTLRT WHLSITNAVN HSPTTFYHTT TKFILHSHHK VTTTLPILIS IPQNKTNLTQ  60
PQNHSNKIIT PPHTHKTITI KLTHTNTTNP KSNSFTISSC QIKTMSDPTT TALPHPSIIP  120
NQHHNLPLLH GVTTTAQPPP PPPPPSSREY RKGNWTIQET LILITAKKLD DERRLKNTST  180
PSSSQDPNRT TTNVTSIASA SSSNRNSGEL RWKWVENYCW SNGCLRSQNQ CNDKWDNLLR  240
DYKKVRDYES KSESPNNNKL DFPSYWTLNK QQRKEQNLPS NMVFEVYQAI SDVLQRKQSQ  300
RIITNPQQQQ NLVTLVSSSQ QPPLLQAQPL PPLPPPLPLQ QPPPPPHAPA SSTTPVVSER  360
SESSDSEHSE DNDDDDGSES KRRKVKNLGS SIMRSASVLA RALRRCEEKK EKRHRELIEL  420
EQRRIQMEEA RNEVHRQGIA TLVAAVTNLS GAIQSFINSE HHGRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2210135e-89KF221013.1 Glycine max cultivar Kwangkyo clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
GenBankKF2210145e-89KF221014.1 Glycine max cultivar Ilpumgeomjeong clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
GenBankKF2210165e-89KF221016.1 Glycine max cultivar PI96983 clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
GenBankKF2210185e-89KF221018.1 Glycine max cultivar Geomjeongol clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
GenBankKF2210205e-89KF221020.1 Glycine soja cultivar IT162825 clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
GenBankKF2210235e-89KF221023.1 Glycine soja cultivar IT182840 clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
GenBankKF2210245e-89KF221024.1 Glycine soja cultivar IT182848 clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
GenBankKF2210255e-89KF221025.1 Glycine soja cultivar IT182932 clone 1f1r hydroxyproline-rich glycoprotein family protein (Glyma20g32540) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496217.20.0PREDICTED: trihelix transcription factor GTL1-like
TrEMBLA0A072VPY81e-167A0A072VPY8_MEDTR; Myb/SANT-like DNA-binding domain protein
STRINGGLYMA20G32540.21e-131(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-45Trihelix family protein